Package scripps.vvm.schemes

Class Summary

AtomColor_ByAtomType	Gives an atom color as a function atom type.
AtomColor_ByChainID	Gives an atom color as a function of chain id.
AtomColor_ByConstant	Gives an atom color that is always the same regarless of atom type.
AtomColor_ByResidueHydrophobicity	Gives an atom color as a function of residue type
AtomColor_ByResidueType	Gives an atom color as a function of residue type
AtomColor_ByTFact	Gives an atom color as a function of temperture factor
AtomColorScheme	The atom color schemes define an visual atom color based on a property of nature.
AtomRadii_ByAtomType	Returns an atom radius that is a function of atom type (element type, maybe different for diferent locations of an atom, like CA vs.
AtomRadii_ByConnollyNumbers	Returns an the atom radius for the atom as used by Connolly's molecular surface calculater.
AtomRadii_ByConstant	Returns a constant atom radius value, for any atom
AtomRadiiScheme	The atom radii schemes define an visual atom radius based on a property of nature.
AtomShape_ByConstant
AtomShapeScheme
AtomText_ByAtomIdentity
AtomText_ByAtomType
BondThickness_ByConstant	Returns the same bond thickness, for any kind of bond.
BondThicknessScheme	The bond radii schemes define an visual bond thickness based on a property of nature.
GeneralConstantScheme
NullScheme	Sceme indicating no assignment is done
ResidueColor_ByChainID	Gives a residue color as a function of chain id
ResidueColor_ByConstant	Gives a residue color that is always the same, regless of resdiue properties.
ResidueColor_ByResidueType
ResidueColor_BySSType
ResidueColorScheme	The residue color schemes define an visual residue color based on a property of nature.
ResidueText_ByResidueIdentity
ResidueText_ByResidueType
Scheme	A Scheme mapps a molecule element to a visual property.
ShowAtom_ByConstant
ShowAtomScheme
SSType_ByConstant	Gives a constant secondary structure type, regardless of residue type.
SSType_ByPDBEntry	Gives a secondary structure type id that follows the PDB file's hints.
SSTypeScheme	The SS Type schemes return a secondary structure type id for a residue.