scripps.vvm.schemes
Class ResidueColor_ByResidueType

java.lang.Object
  |
  +--harmonic.mz.data.ModelNode
        |
        +--scripps.vvm.schemes.Scheme
              |
              +--scripps.vvm.schemes.ResidueColorScheme
                    |
                    +--scripps.vvm.schemes.ResidueColor_ByResidueType

All Implemented Interfaces:

java.awt.event.ActionListener, harmonic.mz.data.DataNode, harmonic.mz.gui.Documentable, java.util.EventListener, harmonic.mz.data.Interpolater, harmonic.meshGeom.math.MarkableObject, harmonic.mz.event.NodeListener

public class ResidueColor_ByResidueType

extends ResidueColorScheme

Field Summary

harmonic.mz.data.fields.ColorField	adenosine
harmonic.mz.data.fields.ColorField	ala
harmonic.mz.data.fields.ColorField	arg
harmonic.mz.data.fields.ColorField	asn
harmonic.mz.data.fields.ColorField	asp
harmonic.mz.data.fields.ScalarField	colorScale
harmonic.mz.data.fields.ColorField	cys
harmonic.mz.data.fields.ColorField	cytosine
harmonic.mz.data.fields.ColorField	def
harmonic.mz.data.fields.ColorField	gln
harmonic.mz.data.fields.ColorField	glu
harmonic.mz.data.fields.ColorField	gly
harmonic.mz.data.fields.ColorField	guanosine
harmonic.mz.data.fields.ColorField	his
harmonic.mz.data.fields.ColorField	ile
harmonic.mz.data.fields.ColorField	leu
harmonic.mz.data.fields.ColorField	lys
harmonic.mz.data.fields.ColorField	met
harmonic.mz.data.fields.ColorField	phe
harmonic.mz.data.fields.ColorField	pro
harmonic.mz.data.fields.ColorField	ser
harmonic.mz.data.fields.ColorField	thr
harmonic.mz.data.fields.ColorField	thymidine
harmonic.mz.data.fields.ColorField	trp
harmonic.mz.data.fields.ColorField	tyr
harmonic.mz.data.fields.ColorField	uridine
harmonic.mz.data.fields.ColorField	val

Fields inherited from class harmonic.mz.data.ModelNode

_fileRoot_, _thread_, ATTRIB_CONTROL_WIDGET, ATTRIB_LISTABLE, ATTRIB_PRESENTABLE, ATTRIB_PRIVATE, ATTRIB_REMOVEABLE, ATTRIB_RENAMEABLE, ATTRIB_SHOW_CONTEXT_MENU, ATTRIB_TYPE_FILTER, ATTRIB_USERGROUP, ATTRIB_VALUE_GROUP, ATTRIB_VE_LISTENER, bCustomCS, bDebug, bValid, name

Constructor Summary

ResidueColor_ByResidueType()

Method Summary

harmonic.mz.data.fields.ColorField	addAA(java.lang.String name, harmonic.meshGeom.math.Clr3f clr)
java.lang.Object	getValue(java.lang.Object _residue, java.lang.Object data)

Methods inherited from class scripps.vvm.schemes.Scheme

nodeChanged

Methods inherited from class harmonic.mz.data.ModelNode

actionPerformed, addAll, addAlphaed, addField, addField, addField, addFields, addNetworkInput, addNetworkOutput, addNode, addNodeListener, addNodeListener, addNodes, addNodes, addToCurrent, addToGlobals, addToNetworkEditor, addToTemps, addWithUndo, allFieldsAreFinal, applyDataTransfer, areFieldsValid, assignFromMetaFields, assignFromXMLAttributes, assignFromXMLString, assignToMetaFields, assignToXMLAttributes, assignToXMLString, at, bind, canSelect, castSelection, checkFileRead, checkNetworkInput, childCount, clean, clearAttrib, clearNotified, compare, copyFrom, createControlWidget, createCopy, createXMLElement, deepCopy, defeatNodeEvents, disableEvents, enableEvents, expectedValidationTime, fileRoot, finalize, findFieldElement, findNode, fromXMLNodes, getAttrib, getBound, getCatagory, getControlWidget, getCurrentNames, getDataTransfer, getDataTransferTypes, getDeleted, getDirectInputs, getDirectOutputs, getEffectors, getEntryListener, getErrorState, getFilterType, getFullName, getHandles, getInstanceURL, getInterpolater, getIsLeaf, getListable, getMark, getMetaFields, getName, getNodeChildren_V, getNodeChildren, getNodeID, getNodeParent, getObjectRep, getPresentable, getPrivate, getReferencePoolName, getRemoteOwner, getRemoveable, getRenameable, getSaveable, getSavedChildren, getSelect, getSeparateDirectInputs, getSeparateDirectOutputs, getSequenced, getSerialNo, getTags, getTentativeSelect, getTransformable, getTransformableParent, getTransient, getTreeName, getTypeImage, getTypeURL, getUnfoldedChildren, getUpdateTime, getUserGroup, getValidates, getValue, getXMLNodes, hasDependants, hasExternalRef, hashKey, hasValidationLock, hideControlWidget, indexOf, initControlWidget, insertNode, interpolate_Linear, interpolate_Quadratic, invalidate, isField, isFinal, isInSubtree, isInTree, isLinked, isNotified, isPurged, isSet, isTemporary, isValid, linkedTo, linksChildren, makeContextMenu, makeFixed, makePrototype, makeReferenced, makeUnreferenced, makeVisibleInGUI, markNotified, mayValidate, notifyListeners, postAssignFromXMLElement, preAssignToXMLElement, printChildren, printTags, printTree, printTree, purge, purgeFinal, pythonString, remove, removeAll, removeAll, removeHandles, removeNetworkInput, removeNetworkOutput, removeNode, removeNode, removeNode, removeNodeListener, replace, selfNodeChanged, set, setActualName, setAttrib, setBound, setCatagory, setChildrenExcept, setCoordSystem, setCurrentControlWidget, setCurrentNames, setDeleted, setEntryListener, setErrorState, setFromPrototype, setIsField, setIsLeaf, setIsSet, setListable, setMark, setMetaFields, setName, setNodeParent, setPresentable, setPrivate, setRemoteOwner, setRemoveable, setRenameable, setSaveable, setSelect, setSelect, setSequenced, setSerialNo, setTentativeSelect, setTentativeSelect, setToLink, setTransient, setTransientChildren, setUpdateTime, setUserGroup, setValidates, setValidationLock, setValue, setValueGroup, showControlWidget, showControlWidget, showControlWidget, showHandles, startRename, tag, toString, unlinkListeners, unmarkNotified, untag, updateBindable, valChanged, valChanged, validate, valueString

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

gly

public harmonic.mz.data.fields.ColorField gly

ala

public harmonic.mz.data.fields.ColorField ala

ser

public harmonic.mz.data.fields.ColorField ser

glu

public harmonic.mz.data.fields.ColorField glu

gln

public harmonic.mz.data.fields.ColorField gln

cys

public harmonic.mz.data.fields.ColorField cys

pro

public harmonic.mz.data.fields.ColorField pro

arg

public harmonic.mz.data.fields.ColorField arg

thr

public harmonic.mz.data.fields.ColorField thr

asp

public harmonic.mz.data.fields.ColorField asp

asn

public harmonic.mz.data.fields.ColorField asn

val

public harmonic.mz.data.fields.ColorField val

tyr

public harmonic.mz.data.fields.ColorField tyr

ile

public harmonic.mz.data.fields.ColorField ile

phe

public harmonic.mz.data.fields.ColorField phe

lys

public harmonic.mz.data.fields.ColorField lys

trp

public harmonic.mz.data.fields.ColorField trp

his

public harmonic.mz.data.fields.ColorField his

met

public harmonic.mz.data.fields.ColorField met

def

public harmonic.mz.data.fields.ColorField def

leu

public harmonic.mz.data.fields.ColorField leu

adenosine

public harmonic.mz.data.fields.ColorField adenosine

cytosine

public harmonic.mz.data.fields.ColorField cytosine

guanosine

public harmonic.mz.data.fields.ColorField guanosine

thymidine

public harmonic.mz.data.fields.ColorField thymidine

uridine

public harmonic.mz.data.fields.ColorField uridine

colorScale

public harmonic.mz.data.fields.ScalarField colorScale

Constructor Detail

ResidueColor_ByResidueType

public ResidueColor_ByResidueType()

Method Detail

addAA

public harmonic.mz.data.fields.ColorField addAA(java.lang.String name,
                                                harmonic.meshGeom.math.Clr3f clr)

getValue

public java.lang.Object getValue(java.lang.Object _residue,
                                 java.lang.Object data)

Specified by:

getValue in class Scheme