scripps.vvm.manager
Class RepManager

java.lang.Object
  |
  +--scripps.vvm.manager.RepManager

public class RepManager

extends java.lang.Object

Field Summary

boolean	bPosted
boolean	bPropListening
VVM_RepShape	curRep

Constructor Summary

RepManager()

Method Summary

void	addRep(VVM_RepShape rep)
void	applyLabels(TreeNodeSet subset, java.lang.String labelMode)
void	centerOnRep(VVM_RepShape rep)
void	clearToggleTable()
void	disablePropertyListening()
void	enablePropertyListening()
void	fitRep(harmonic.mz.data.ShapeNode rep)
java.util.Vector	getAllReps()
VVM_RepShape	getCurrentRep()
java.util.Vector	getRepsOfMolecule(Molecule mol)
void	hideRep(VVM_RepShape rep)
void	hideRepsOfMolecule(Molecule mol)
void	labelAtom(Atom atom, harmonic.mz.data.ShapeGroup labelGroup)
void	labelResidue(Residue residue, harmonic.mz.data.ShapeGroup labelGroup)
void	nodeChanged(harmonic.mz.event.NodeEvent event)
void	removeRep(VVM_RepShape rep)
void	repAdded(VVM_RepShape rep)
void	repRemoved(VVM_RepShape rep)
void	setCurrentRep(VVM_RepShape rep) Set current rep effected by user interface
void	showDefault_BAS(Protein mol)
void	showDefault_CPK(Protein mol)
void	showDefault_Metals(Protein mol)
void	showDefault_MolSurface(Protein mol)
void	showDefault_Ribbons(Protein mol)
void	showDefault_Tubes(Protein mol)
void	showDefault_Wires(Protein mol)
void	showDefault(Protein mol) Show default representation.
void	showRep(VVM_RepShape rep)
void	showRepsOfMolecule(Molecule mol)
void	unlabelAtom(Atom atom)
void	unlabelResidue(Residue residue)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

curRep

public VVM_RepShape curRep

bPosted

public boolean bPosted

bPropListening

public boolean bPropListening

Constructor Detail

RepManager

public RepManager()

Method Detail

setCurrentRep

public void setCurrentRep(VVM_RepShape rep)

Set current rep effected by user interface

showDefault

public void showDefault(Protein mol)

Show default representation.

showDefault_Metals

public void showDefault_Metals(Protein mol)

showDefault_MolSurface

public void showDefault_MolSurface(Protein mol)

showDefault_CPK

public void showDefault_CPK(Protein mol)

showDefault_BAS

public void showDefault_BAS(Protein mol)

showDefault_Wires

public void showDefault_Wires(Protein mol)

showDefault_Tubes

public void showDefault_Tubes(Protein mol)

showDefault_Ribbons

public void showDefault_Ribbons(Protein mol)

getCurrentRep

public VVM_RepShape getCurrentRep()

addRep

public void addRep(VVM_RepShape rep)

getAllReps

public java.util.Vector getAllReps()

getRepsOfMolecule

public java.util.Vector getRepsOfMolecule(Molecule mol)

showRep

public void showRep(VVM_RepShape rep)

hideRep

public void hideRep(VVM_RepShape rep)

removeRep

public void removeRep(VVM_RepShape rep)

showRepsOfMolecule

public void showRepsOfMolecule(Molecule mol)

hideRepsOfMolecule

public void hideRepsOfMolecule(Molecule mol)

fitRep

public void fitRep(harmonic.mz.data.ShapeNode rep)

centerOnRep

public void centerOnRep(VVM_RepShape rep)

repRemoved

public void repRemoved(VVM_RepShape rep)

repAdded

public void repAdded(VVM_RepShape rep)

applyLabels

public void applyLabels(TreeNodeSet subset,
                        java.lang.String labelMode)

labelAtom

public void labelAtom(Atom atom,
                      harmonic.mz.data.ShapeGroup labelGroup)

unlabelAtom

public void unlabelAtom(Atom atom)

labelResidue

public void labelResidue(Residue residue,
                         harmonic.mz.data.ShapeGroup labelGroup)

unlabelResidue

public void unlabelResidue(Residue residue)

clearToggleTable

public void clearToggleTable()

enablePropertyListening

public void enablePropertyListening()

disablePropertyListening

public void disablePropertyListening()

nodeChanged

public void nodeChanged(harmonic.mz.event.NodeEvent event)