scripps.mol_data
Class Residue

java.lang.Object
  |
  +--harmonic.mz.data.SimpleNode
        |
        +--scripps.mol_data.MolElement
              |
              +--scripps.mol_data.Residue

All Implemented Interfaces:

harmonic.mz.data.DataNode, harmonic.meshGeom.math.MarkableObject

public class Residue

extends MolElement

Field Summary

harmonic.mz.data.fields.NodeSetField	atoms
static java.lang.String	HELIX
static java.lang.String	LOOP
java.lang.String	number
java.lang.String	sstype
static java.lang.String	STRAND
static java.lang.String	TURN
java.lang.String	type

Fields inherited from class scripps.mol_data.MolElement

hashIndex

Constructor Summary

Residue()

Residue(java.lang.String name)

Method Summary

Atom	findAtom(java.lang.String name)
AtomSet	getAtoms()
Chain	getChain()
int	getChainIndex()
java.lang.String	getNumber()
java.lang.String	getSSType()
java.lang.String	getType()
void	setNumber(java.lang.String number)
void	setSSType(java.lang.String sstype)
void	setType(java.lang.String type)
int	sortIndex()

Methods inherited from class scripps.mol_data.MolElement

getMark, getMolecule, setMark, toString

Methods inherited from class harmonic.mz.data.SimpleNode

addField, addNode, addNodeListener, assignFromXMLAttributes, assignToXMLAttributes, at, canSelect, childCount, clearAttrib, createXMLElement, fileRoot, fromXMLNodes, getAttrib, getName, getNodeChildren, getNodeParent, getRemoteOwner, getSelect, getSerialNo, getTreeName, getTypeImage, getUpdateTime, getXMLNodes, isField, linkedTo, makeReferenced, makeUnreferenced, notifyListeners, purge, purgeFinal, removeNode, removeNodeListener, set, setAttrib, setIsField, setName, setNodeParent, setRemoteOwner, setSelect, setSerialNo, setUpdateTime, valueString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

atoms

public harmonic.mz.data.fields.NodeSetField atoms

type

public java.lang.String type

number

public java.lang.String number

sstype

public java.lang.String sstype

HELIX

public static final java.lang.String HELIX

See Also:

Constant Field Values

STRAND

public static final java.lang.String STRAND

See Also:

Constant Field Values

TURN

public static final java.lang.String TURN

See Also:

Constant Field Values

LOOP

public static final java.lang.String LOOP

See Also:

Constant Field Values

Constructor Detail

Residue

public Residue()

Residue

public Residue(java.lang.String name)

Method Detail

setType

public void setType(java.lang.String type)

setNumber

public void setNumber(java.lang.String number)

setSSType

public void setSSType(java.lang.String sstype)

getType

public java.lang.String getType()

getNumber

public java.lang.String getNumber()

getSSType

public java.lang.String getSSType()

getChainIndex

public int getChainIndex()

sortIndex

public int sortIndex()

Overrides:

sortIndex in class MolElement

getAtoms

public AtomSet getAtoms()

findAtom

public Atom findAtom(java.lang.String name)

getChain

public Chain getChain()