scripps.mol_data
Class DSSPFinder

java.lang.Object
  |
  +--scripps.mol_data.DSSPFinder

public class DSSPFinder

extends java.lang.Object

Constructor Summary

DSSPFinder(Protein mol)

Method Summary

void	readDSSP(java.lang.String outFile)
void	runAndRead(java.lang.String dsspExe, java.lang.String tempDir)
void	runDSSP(java.lang.String dsspExe, java.lang.String tempDir)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DSSPFinder

public DSSPFinder(Protein mol)

Method Detail

runAndRead

public void runAndRead(java.lang.String dsspExe,
                       java.lang.String tempDir)
                throws java.lang.Exception

java.lang.Exception

runDSSP

public void runDSSP(java.lang.String dsspExe,
                    java.lang.String tempDir)

readDSSP

public void readDSSP(java.lang.String outFile)
              throws java.lang.Exception

java.lang.Exception