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Hierarchy For All Packages
Package Hierarchies:
scripps.mol_data
,
scripps.vvm.graphics
,
scripps.vvm.manager
,
scripps.vvm.props
,
scripps.vvm.schemes
Class Hierarchy
class java.lang.Object
class scripps.mol_data.
AtomEvent
class scripps.mol_data.
BondMaker
class scripps.mol_data.
ChemUtil
class scripps.vvm.manager.
CursorManager
class scripps.mol_data.
DSSPFinder
class scripps.mol_data.
ElementHash
class scripps.vvm.manager.
ExInterpreter
class harmonic.mz.data.ModelNode (implements java.awt.event.ActionListener, harmonic.mz.data.DataNode, harmonic.mz.gui.Documentable, harmonic.mz.data.Interpolater, harmonic.meshGeom.math.MarkableObject, harmonic.mz.event.NodeListener)
class scripps.vvm.data.ElementProperty
class scripps.vvm.props.
AtomColorProp
class scripps.vvm.props.
AtomRadiusProp
class scripps.vvm.props.
AtomShapeProp
class scripps.vvm.props.
AtomTextProp
class scripps.vvm.props.
BondColorProp
class scripps.vvm.props.
BondHalfnessProp
class scripps.vvm.props.
BondThicknessProp
class scripps.vvm.props.
IncludeAtomProp
class scripps.vvm.props.
ResidueColorProp
class scripps.vvm.props.
ResidueSSProp
class scripps.vvm.props.
ResidueTextProp
class scripps.vvm.props.
ShowAtomProp
class scripps.vvm.props.
ShowBondProp
class scripps.vvm.props.
ShowResidueProp
class scripps.vvm.props.
TraceThicknessProp
class harmonic.mz.function.Module
class scripps.vvm.manager.
VVM
(implements harmonic.mz.event.NodeListener)
class scripps.vvm.schemes.
Scheme
class scripps.vvm.schemes.
AtomColorScheme
class scripps.vvm.schemes.
AtomColor_ByAtomType
class scripps.vvm.schemes.
AtomColor_ByChainID
class scripps.vvm.schemes.
AtomColor_ByConstant
class scripps.vvm.schemes.
AtomColor_ByResidueHydrophobicity
class scripps.vvm.schemes.
AtomColor_ByResidueType
class scripps.vvm.schemes.
AtomColor_ByTFact
class scripps.vvm.schemes.
AtomRadiiScheme
class scripps.vvm.schemes.
AtomRadii_ByAtomType
class scripps.vvm.schemes.
AtomRadii_ByConnollyNumbers
class scripps.vvm.schemes.
AtomRadii_ByConstant
class scripps.vvm.schemes.
AtomShape_ByConstant
class scripps.vvm.schemes.
AtomShapeScheme
class scripps.vvm.schemes.
AtomText_ByAtomIdentity
class scripps.vvm.schemes.
AtomText_ByAtomType
class scripps.vvm.schemes.
BondThicknessScheme
class scripps.vvm.schemes.
BondThickness_ByConstant
class scripps.vvm.schemes.
GeneralConstantScheme
class scripps.vvm.schemes.
NullScheme
class scripps.vvm.schemes.
ResidueColorScheme
class scripps.vvm.schemes.
ResidueColor_ByChainID
class scripps.vvm.schemes.
ResidueColor_ByConstant
class scripps.vvm.schemes.
ResidueColor_ByResidueType
class scripps.vvm.schemes.
ResidueColor_BySSType
class scripps.vvm.schemes.
ResidueText_ByResidueIdentity
class scripps.vvm.schemes.
ResidueText_ByResidueType
class scripps.vvm.schemes.
ShowAtom_ByConstant
class scripps.vvm.schemes.
ShowAtomScheme
class scripps.vvm.schemes.
SSTypeScheme
class scripps.vvm.schemes.
SSType_ByConstant
class scripps.vvm.schemes.
SSType_ByPDBEntry
class harmonic.mz.data.ShapeGroup (implements harmonic.mz.data.Transformable)
class scripps.mol_data.
Molecule
class scripps.mol_data.
Protein
class harmonic.mz.data.ShapeNode (implements harmonic.viewer3D.ShapeOwner, harmonic.mz.data.Transformable)
class scripps.vvm.graphics.
AtomCursorShape
class scripps.vvm.graphics.
BondCursorShape
class scripps.vvm.graphics.
MoleculeBoxShape
class scripps.vvm.graphics.
ResCursorShape
class harmonic.mz.visuals.text.TextShape
class scripps.vvm.graphics.
VVMLabelShape
class scripps.vvm.graphics.
VVM_Shape
class scripps.vvm.graphics.
VVM_RepShape
(implements scripps.mol_data.
AtomListener
)
class scripps.vvm.graphics.
AtomLabelShape
class scripps.vvm.graphics.
BASShape
class scripps.vvm.graphics.
CPKShape
class scripps.vvm.graphics.
MolSurfaceShape
class scripps.vvm.graphics.
ResidueLabelShape
class scripps.vvm.graphics.
RibbonBackboneShape
class scripps.vvm.graphics.
TubeBackboneShape
class scripps.vvm.graphics.
WireShape
class scripps.vvm.manager.
MoleculeManager
class harmonic.viewer3D.PaintStruct (implements harmonic.meshGeom.math.MarkableObject)
class scripps.vvm.graphics.
ResCursorShape.RCPainter
class scripps.mol_data.
PdbReader
class scripps.mol_data.
PdbReader2
class scripps.mol_data.
PdbWriter
class scripps.vvm.manager.
PropOperations
class harmonic.mz.data.Prototype
class scripps.vvm.manager.
VVM.VVM_Prototype
class scripps.vvm.manager.
RepManager
class scripps.vvm.manager.
SetManager
class scripps.vvm.manager.
SetOperations
class harmonic.mz.data.SimpleNode (implements harmonic.mz.data.DataNode)
class scripps.mol_data.
MolElement
(implements harmonic.meshGeom.math.MarkableObject)
class scripps.mol_data.
Atom
class scripps.mol_data.
Bond
class scripps.mol_data.
Chain
class scripps.mol_data.
Residue
class scripps.mol_data.
TreeNodeSet
class scripps.mol_data.
AtomSet
class scripps.mol_data.
BondSet
class scripps.mol_data.
ChainSet
class scripps.mol_data.
MoleculeSet
class scripps.mol_data.
ResidueSet
class scripps.vvm.manager.
Util
class scripps.vvm.graphics.
VertFaceReader
class scripps.vvm.manager.
VVM_HighLevels
class scripps.vvm.manager.
VVMSnapSearcher
(implements harmonic.mz.snap.PointSnapSearcher)
Interface Hierarchy
interface scripps.mol_data.
AtomListener
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