Hierarchy For All Packages

Package Hierarchies:

scripps.mol_data, scripps.vvm.graphics, scripps.vvm.manager, scripps.vvm.props, scripps.vvm.schemes

Class Hierarchy

• class java.lang.Object
  • class scripps.mol_data.AtomEvent
  • class scripps.mol_data.BondMaker
  • class scripps.mol_data.ChemUtil
  • class scripps.vvm.manager.CursorManager
  • class scripps.mol_data.DSSPFinder
  • class scripps.mol_data.ElementHash
  • class scripps.vvm.manager.ExInterpreter
  • class harmonic.mz.data.ModelNode (implements java.awt.event.ActionListener, harmonic.mz.data.DataNode, harmonic.mz.gui.Documentable, harmonic.mz.data.Interpolater, harmonic.meshGeom.math.MarkableObject, harmonic.mz.event.NodeListener)
    • class scripps.vvm.data.ElementProperty
      • class scripps.vvm.props.AtomColorProp
      • class scripps.vvm.props.AtomRadiusProp
      • class scripps.vvm.props.AtomShapeProp
      • class scripps.vvm.props.AtomTextProp
      • class scripps.vvm.props.BondColorProp
      • class scripps.vvm.props.BondHalfnessProp
      • class scripps.vvm.props.BondThicknessProp
      • class scripps.vvm.props.IncludeAtomProp
      • class scripps.vvm.props.ResidueColorProp
      • class scripps.vvm.props.ResidueSSProp
      • class scripps.vvm.props.ResidueTextProp
      • class scripps.vvm.props.ShowAtomProp
      • class scripps.vvm.props.ShowBondProp
      • class scripps.vvm.props.ShowResidueProp
      • class scripps.vvm.props.TraceThicknessProp
    • class harmonic.mz.function.Module
      • class scripps.vvm.manager.VVM (implements harmonic.mz.event.NodeListener)
    • class scripps.vvm.schemes.Scheme
      • class scripps.vvm.schemes.AtomColorScheme
        • class scripps.vvm.schemes.AtomColor_ByAtomType
        • class scripps.vvm.schemes.AtomColor_ByChainID
        • class scripps.vvm.schemes.AtomColor_ByConstant
        • class scripps.vvm.schemes.AtomColor_ByResidueHydrophobicity
        • class scripps.vvm.schemes.AtomColor_ByResidueType
        • class scripps.vvm.schemes.AtomColor_ByTFact
      • class scripps.vvm.schemes.AtomRadiiScheme
        • class scripps.vvm.schemes.AtomRadii_ByAtomType
        • class scripps.vvm.schemes.AtomRadii_ByConnollyNumbers
        • class scripps.vvm.schemes.AtomRadii_ByConstant
      • class scripps.vvm.schemes.AtomShape_ByConstant
      • class scripps.vvm.schemes.AtomShapeScheme
      • class scripps.vvm.schemes.AtomText_ByAtomIdentity
      • class scripps.vvm.schemes.AtomText_ByAtomType
      • class scripps.vvm.schemes.BondThicknessScheme
        • class scripps.vvm.schemes.BondThickness_ByConstant
      • class scripps.vvm.schemes.GeneralConstantScheme
      • class scripps.vvm.schemes.NullScheme
      • class scripps.vvm.schemes.ResidueColorScheme
        • class scripps.vvm.schemes.ResidueColor_ByChainID
        • class scripps.vvm.schemes.ResidueColor_ByConstant
        • class scripps.vvm.schemes.ResidueColor_ByResidueType
        • class scripps.vvm.schemes.ResidueColor_BySSType
      • class scripps.vvm.schemes.ResidueText_ByResidueIdentity
      • class scripps.vvm.schemes.ResidueText_ByResidueType
      • class scripps.vvm.schemes.ShowAtom_ByConstant
      • class scripps.vvm.schemes.ShowAtomScheme
      • class scripps.vvm.schemes.SSTypeScheme
        • class scripps.vvm.schemes.SSType_ByConstant
        • class scripps.vvm.schemes.SSType_ByPDBEntry
    • class harmonic.mz.data.ShapeGroup (implements harmonic.mz.data.Transformable)
      • class scripps.mol_data.Molecule
        • class scripps.mol_data.Protein
    • class harmonic.mz.data.ShapeNode (implements harmonic.viewer3D.ShapeOwner, harmonic.mz.data.Transformable)
      • class scripps.vvm.graphics.AtomCursorShape
      • class scripps.vvm.graphics.BondCursorShape
      • class scripps.vvm.graphics.MoleculeBoxShape
      • class scripps.vvm.graphics.ResCursorShape
      • class harmonic.mz.visuals.text.TextShape
        • class scripps.vvm.graphics.VVMLabelShape
      • class scripps.vvm.graphics.VVM_Shape
        • class scripps.vvm.graphics.VVM_RepShape (implements scripps.mol_data.AtomListener)
          • class scripps.vvm.graphics.AtomLabelShape
          • class scripps.vvm.graphics.BASShape
          • class scripps.vvm.graphics.CPKShape
          • class scripps.vvm.graphics.MolSurfaceShape
          • class scripps.vvm.graphics.ResidueLabelShape
          • class scripps.vvm.graphics.RibbonBackboneShape
          • class scripps.vvm.graphics.TubeBackboneShape
          • class scripps.vvm.graphics.WireShape
  • class scripps.vvm.manager.MoleculeManager
  • class harmonic.viewer3D.PaintStruct (implements harmonic.meshGeom.math.MarkableObject)
    • class scripps.vvm.graphics.ResCursorShape.RCPainter
  • class scripps.mol_data.PdbReader
  • class scripps.mol_data.PdbReader2
  • class scripps.mol_data.PdbWriter
  • class scripps.vvm.manager.PropOperations
  • class harmonic.mz.data.Prototype
    • class scripps.vvm.manager.VVM.VVM_Prototype
  • class scripps.vvm.manager.RepManager
  • class scripps.vvm.manager.SetManager
  • class scripps.vvm.manager.SetOperations
  • class harmonic.mz.data.SimpleNode (implements harmonic.mz.data.DataNode)
    • class scripps.mol_data.MolElement (implements harmonic.meshGeom.math.MarkableObject)
      • class scripps.mol_data.Atom
      • class scripps.mol_data.Bond
      • class scripps.mol_data.Chain
      • class scripps.mol_data.Residue
  • class scripps.mol_data.TreeNodeSet
    • class scripps.mol_data.AtomSet
    • class scripps.mol_data.BondSet
    • class scripps.mol_data.ChainSet
    • class scripps.mol_data.MoleculeSet
    • class scripps.mol_data.ResidueSet
  • class scripps.vvm.manager.Util
  • class scripps.vvm.graphics.VertFaceReader
  • class scripps.vvm.manager.VVM_HighLevels
  • class scripps.vvm.manager.VVMSnapSearcher (implements harmonic.mz.snap.PointSnapSearcher)

Interface Hierarchy

• interface scripps.mol_data.AtomListener